Variant report

Variant	rs10774487
Chromosome Location	chr12:119573906-119573907
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10849630	0.81[CEU][hapmap]
rs11064677	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs12812410	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4073207	0.83[ASN][1000 genomes]
rs4075946	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4265644	0.83[ASN][1000 genomes]
rs6490236	0.82[CEU][hapmap]
rs7136574	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs7138303	0.81[ASN][1000 genomes]
rs7298308	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs7298583	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs7301936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7309398	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs7311511	0.82[CEU][hapmap];0.81[ASN][1000 genomes]
rs7311624	0.81[ASN][1000 genomes]
rs7311828	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7314993	0.81[ASN][1000 genomes]
rs7316343	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7954884	0.87[CEU][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119570800-119576200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:119571200-119594600	Weak transcription	Fetal Brain Male	brain
3	chr12:119571600-119582200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:119571800-119583000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr12:119572000-119583200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr12:119572800-119574000	Strong transcription	Fetal Brain Female	brain
7	chr12:119573000-119582600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:119573000-119585000	Weak transcription	Brain Angular Gyrus	brain
9	chr12:119573000-119586000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr12:119573200-119576000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:119573800-119574400	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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