Variant report

Variant	rs7301936
Chromosome Location	chr12:119569596-119569597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10744735	0.83[ASN][1000 genomes]
rs10774487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10849630	0.82[CEU][hapmap]
rs11064674	0.98[CHD][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs11064677	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs12812410	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4073207	0.87[ASN][1000 genomes]
rs4075946	1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4265644	0.87[ASN][1000 genomes]
rs6490236	0.81[CEU][hapmap]
rs7136574	0.87[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs7138303	0.84[ASN][1000 genomes]
rs7298308	0.82[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7298583	0.82[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7309398	0.82[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7311511	0.81[CEU][hapmap];0.84[ASN][1000 genomes]
rs7311624	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7311828	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7314993	0.84[ASN][1000 genomes]
rs7316343	1.00[CEU][hapmap];0.91[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7954884	0.86[CEU][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv3324701	chr12:119565769-119570267	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119568000-119569600	Strong transcription	Brain Inferior Temporal Lobe	brain
2	chr12:119568000-119569600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:119568000-119573200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:119568800-119571200	ZNF genes & repeats	Fetal Brain Male	brain
5	chr12:119568800-119572000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr12:119568800-119572800	ZNF genes & repeats	Brain Germinal Matrix	brain
7	chr12:119569200-119572800	ZNF genes & repeats	Fetal Brain Female	brain
8	chr12:119569400-119569800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:119569400-119570400	ZNF genes & repeats	Brain Angular Gyrus	brain

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