Variant report

Variant	rs10774901
Chromosome Location	chr12:117526678-117526679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10744889	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10744890	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10850754	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1106277	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12423796	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1546246	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1546247	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1546248	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2173651	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4341616	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304889	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7308236	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7959367	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963451	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117515200-117535200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:117515400-117528600	Weak transcription	K562	blood
3	chr12:117521000-117527000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr12:117521600-117530400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr12:117522400-117527000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:117523800-117527400	Weak transcription	Dnd41	blood
7	chr12:117524000-117528400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr12:117524400-117526800	Enhancers	Pancreas	Pancrea
9	chr12:117525000-117528400	Enhancers	HepG2	liver
10	chr12:117525200-117527000	Weak transcription	A549	lung
11	chr12:117525200-117528600	Weak transcription	Right Ventricle	heart
12	chr12:117525400-117528800	Weak transcription	Fetal Heart	heart
13	chr12:117525400-117530800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr12:117526200-117528600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr12:117526600-117526800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:117526600-117527000	Enhancers	Gastric	stomach
17	chr12:117526600-117527200	Enhancers	Left Ventricle	heart
18	chr12:117526600-117527200	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links