Variant report

Variant	rs7963451
Chromosome Location	chr12:117529889-117529890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:117522745..117531514-chr12:117533680..117541602,11	K562	blood:
2	chr12:117517303..117519421-chr12:117527171..117531025,3	K562	blood:
3	chr12:117521637..117523408-chr12:117528244..117530881,2	MCF-7	breast:
4	chr12:117488907..117491503-chr12:117528799..117530966,2	K562	blood:

Variant related genes	Relation type
ENSG00000258285	Chromatin interaction
ENSG00000088992	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10744889	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10744890	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10774901	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10850754	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1106277	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12423796	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1546246	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1546247	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1546248	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2173651	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4341616	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304889	0.89[EUR][1000 genomes]
rs7308236	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7959367	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117515200-117535200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:117521600-117530400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr12:117525400-117530800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:117527400-117533200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:117528200-117534600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:117528400-117531400	Enhancers	Stomach Mucosa	stomach
7	chr12:117528400-117534600	Enhancers	Pancreas	Pancrea
8	chr12:117528600-117530000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr12:117528600-117530000	Enhancers	K562	blood
10	chr12:117528600-117530200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:117528600-117530200	Enhancers	Right Ventricle	heart
12	chr12:117528800-117536000	Weak transcription	Right Atrium	heart
13	chr12:117529000-117530000	Genic enhancers	A549	lung
14	chr12:117529000-117530000	Flanking Active TSS	HepG2	liver
15	chr12:117529000-117530800	Weak transcription	Dnd41	blood
16	chr12:117529200-117534600	Weak transcription	Brain Anterior Caudate	brain
17	chr12:117529400-117531400	Weak transcription	Fetal Heart	heart
18	chr12:117529400-117532600	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr12:117529400-117534800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr12:117529600-117530000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr12:117529600-117530000	Bivalent Enhancer	Fetal Muscle Leg	muscle
22	chr12:117529600-117530600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr12:117529600-117532400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr12:117529600-117536000	Weak transcription	Lung	lung
25	chr12:117529800-117530000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:117529800-117530200	Weak transcription	Left Ventricle	heart
27	chr12:117529800-117532600	Enhancers	Gastric	stomach
28	chr12:117529800-117535000	Weak transcription	Spleen	Spleen

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