Variant report

Variant	rs10774943
Chromosome Location	chr12:118037855-118037856
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10129056	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10774941	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10774942	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10850852	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10850853	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11068566	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1400588	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4767576	0.81[EUR][1000 genomes]
rs7313062	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7968818	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7972611	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7976621	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118031600-118041000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:118031600-118041400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:118035000-118041200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:118037000-118038600	Enhancers	Pancreas	Pancrea
5	chr12:118037200-118038400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:118037200-118041200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr12:118037200-118044600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:118037400-118038400	Enhancers	HepG2	liver
9	chr12:118037600-118041200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr12:118037800-118038400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:118037800-118041200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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