Variant report

Variant	rs10129056
Chromosome Location	chr12:118033774-118033775
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10774939	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10774941	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10774942	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10774943	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10850849	0.82[ASN][1000 genomes]
rs10850850	0.82[ASN][1000 genomes]
rs10850852	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10850853	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11068554	0.85[ASN][1000 genomes]
rs11068558	0.82[ASN][1000 genomes]
rs11068563	0.84[ASN][1000 genomes]
rs11068566	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1400588	0.82[EUR][1000 genomes]
rs2063943	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7968818	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7970894	0.82[ASN][1000 genomes]
rs7976621	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118021800-118036800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:118031400-118036800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr12:118031600-118041000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:118031600-118041400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:118032800-118034400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:118032800-118037800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links