Variant report

Variant	rs11068554
Chromosome Location	chr12:118024160-118024161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10129056	0.85[ASN][1000 genomes]
rs10774939	0.83[ASN][1000 genomes]
rs10774942	0.84[ASN][1000 genomes]
rs10850845	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11068555	0.81[ASN][1000 genomes]
rs67773897	0.82[AMR][1000 genomes]
rs73211917	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118019000-118025000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:118021800-118036800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:118022600-118025000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:118022600-118025200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:118022600-118025400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:118022800-118025200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:118023000-118025000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:118023400-118025200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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