Variant report

Variant	rs10850845
Chromosome Location	chr12:118017851-118017852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11068553	1.00[CHB][hapmap];0.85[CHD][hapmap]
rs11068554	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67773897	0.81[AMR][1000 genomes]
rs73211917	0.86[AMR][1000 genomes]
rs937566	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117975000-118018200	Weak transcription	HUVEC	blood vessel
2	chr12:118005400-118018000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:118009600-118018200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:118014600-118018400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:118016800-118018200	Weak transcription	A549	lung
6	chr12:118017400-118018800	Enhancers	Psoas Muscle	Psoas
7	chr12:118017600-118018000	Enhancers	Adipose Nuclei	Adipose
8	chr12:118017600-118018000	Enhancers	Rectal Smooth Muscle	rectum
9	chr12:118017600-118018000	Enhancers	Right Atrium	heart
10	chr12:118017600-118018200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:118017600-118018400	Enhancers	Brain Substantia Nigra	brain
12	chr12:118017600-118018400	Weak transcription	Fetal Brain Male	brain
13	chr12:118017600-118018400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr12:118017600-118018600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr12:118017800-118018000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:118017800-118018200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr12:118017800-118019200	Enhancers	Brain Hippocampus Middle	brain
18	chr12:118017800-118020000	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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