Variant report

Variant	rs937566
Chromosome Location	chr12:118016678-118016679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10850845	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11611523	0.81[ASN][1000 genomes]
rs11611561	0.81[ASN][1000 genomes]
rs11612054	0.85[ASN][1000 genomes]
rs1464162	0.85[EUR][1000 genomes]
rs35920368	0.85[ASN][1000 genomes]
rs67773897	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117975000-118018200	Weak transcription	HUVEC	blood vessel
2	chr12:118005400-118018000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr12:118009600-118018200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:118010400-118017400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:118014600-118018400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:118016600-118016800	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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