Variant report

Variant	rs11611561
Chromosome Location	chr12:118019063-118019064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11068551	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11068579	0.80[EUR][1000 genomes]
rs11068580	0.80[EUR][1000 genomes]
rs11611523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11612054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34393249	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35920368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4414314	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4767570	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4767571	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs816196	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs937566	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118017800-118019200	Enhancers	Brain Hippocampus Middle	brain
2	chr12:118017800-118020000	Enhancers	Fetal Muscle Leg	muscle
3	chr12:118018000-118019200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:118018000-118021400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr12:118018200-118019200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr12:118018200-118019200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:118018200-118019200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:118018200-118019200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:118018200-118019200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr12:118018200-118019200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:118018200-118020400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr12:118018400-118019200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:118018400-118019200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr12:118018400-118019200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:118018400-118019400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:118018600-118019200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr12:118018800-118019200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr12:118018800-118020200	Weak transcription	Fetal Brain Male	brain
19	chr12:118019000-118019200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr12:118019000-118025000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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