Variant report

Variant	rs4767571
Chromosome Location	chr12:118018700-118018701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11068551	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11068579	0.81[EUR][1000 genomes]
rs11068580	0.81[EUR][1000 genomes]
rs11611523	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11611561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11612054	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2393237	0.80[EUR][1000 genomes]
rs34393249	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35920368	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4414314	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4767570	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs816196	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118017400-118018800	Enhancers	Psoas Muscle	Psoas
2	chr12:118017800-118019200	Enhancers	Brain Hippocampus Middle	brain
3	chr12:118017800-118020000	Enhancers	Fetal Muscle Leg	muscle
4	chr12:118018000-118019200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr12:118018000-118021400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:118018200-118018800	Enhancers	Fetal Muscle Trunk	muscle
7	chr12:118018200-118018800	Bivalent Enhancer	Fetal Stomach	stomach
8	chr12:118018200-118019000	Enhancers	A549	lung
9	chr12:118018200-118019200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr12:118018200-118019200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr12:118018200-118019200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr12:118018200-118019200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr12:118018200-118019200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr12:118018200-118019200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr12:118018200-118020400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr12:118018400-118018800	Enhancers	Adipose Nuclei	Adipose
17	chr12:118018400-118018800	Enhancers	Fetal Brain Male	brain
18	chr12:118018400-118019200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:118018400-118019200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr12:118018400-118019200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr12:118018400-118019400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr12:118018600-118019200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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