Variant report

Variant	rs11068580
Chromosome Location	chr12:118060438-118060439
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10850859	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11068551	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs11068571	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11068579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11611523	0.81[EUR][1000 genomes]
rs11611561	0.80[EUR][1000 genomes]
rs11612054	0.81[EUR][1000 genomes]
rs1517195	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1517202	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2393237	0.81[EUR][1000 genomes]
rs34393249	0.81[EUR][1000 genomes]
rs35920368	0.81[EUR][1000 genomes]
rs4414314	0.82[EUR][1000 genomes]
rs4767570	0.86[EUR][1000 genomes]
rs4767571	0.81[EUR][1000 genomes]
rs7131858	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7316550	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7967918	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118059600-118061000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:118059600-118061000	Enhancers	HUVEC	blood vessel
3	chr12:118059800-118060600	Enhancers	NHEK	skin
4	chr12:118059800-118061000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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