Variant report

Variant	rs2393237
Chromosome Location	chr12:118042642-118042643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10850859	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11068551	0.80[EUR][1000 genomes]
rs11068571	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11068579	0.81[EUR][1000 genomes]
rs11068580	0.81[EUR][1000 genomes]
rs11611523	0.80[EUR][1000 genomes]
rs11612054	0.81[EUR][1000 genomes]
rs1517195	0.81[EUR][1000 genomes]
rs1517202	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34393249	0.80[EUR][1000 genomes]
rs35920368	0.80[EUR][1000 genomes]
rs4414314	0.82[EUR][1000 genomes]
rs4767570	0.85[EUR][1000 genomes]
rs4767571	0.80[EUR][1000 genomes]
rs4767591	0.81[ASN][1000 genomes]
rs7316550	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118037200-118044600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:118038400-118045200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:118042000-118044800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:118042200-118044200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:118042200-118045000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr12:118042400-118045000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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