Variant report

Variant	rs67773897
Chromosome Location	chr12:118018285-118018286
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10850845	0.81[AMR][1000 genomes]
rs11068554	0.82[AMR][1000 genomes]
rs1464162	0.84[AMR][1000 genomes]
rs1850401	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73211917	0.88[AMR][1000 genomes]
rs937566	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832527	chr12:117974007-118110244	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:118014600-118018400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr12:118017400-118018800	Enhancers	Psoas Muscle	Psoas
3	chr12:118017600-118018400	Enhancers	Brain Substantia Nigra	brain
4	chr12:118017600-118018400	Weak transcription	Fetal Brain Male	brain
5	chr12:118017600-118018400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr12:118017600-118018600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:118017800-118019200	Enhancers	Brain Hippocampus Middle	brain
8	chr12:118017800-118020000	Enhancers	Fetal Muscle Leg	muscle
9	chr12:118018000-118018400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:118018000-118018400	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr12:118018000-118019200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr12:118018000-118021400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr12:118018200-118018400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr12:118018200-118018400	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr12:118018200-118018600	Active TSS	Rectal Smooth Muscle	rectum
16	chr12:118018200-118018800	Enhancers	Fetal Muscle Trunk	muscle
17	chr12:118018200-118018800	Bivalent Enhancer	Fetal Stomach	stomach
18	chr12:118018200-118019000	Enhancers	A549	lung
19	chr12:118018200-118019200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr12:118018200-118019200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr12:118018200-118019200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr12:118018200-118019200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr12:118018200-118019200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr12:118018200-118019200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr12:118018200-118020400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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