Variant report

Variant	rs10774999
Chromosome Location	chr12:119316724-119316725
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10851044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11069142	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11069145	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12371260	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12424196	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119314600-119318400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:119314800-119318200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr12:119314800-119318400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:119314800-119318400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:119314800-119318600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:119315000-119318400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:119315800-119318200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:119316000-119317800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:119316000-119318400	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links