Variant report

Variant	rs11069142
Chromosome Location	chr12:119312793-119312794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10774999	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10851044	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11069145	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12371260	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12424196	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119312400-119312800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr12:119312400-119312800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr12:119312400-119312800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
4	chr12:119312400-119313000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:119312600-119312800	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr12:119312600-119312800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr12:119312600-119313000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:119312600-119313400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:119312600-119314800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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