Variant report

Variant	rs10775231
Chromosome Location	chr15:30058297-30058298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:30055034..30056765-chr15:30057565..30059785,2	K562	blood:
2	chr15:30056869..30058668-chr15:30062635..30065302,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10152681	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10519665	1.00[CHB][hapmap]
rs11073205	0.91[EUR][1000 genomes]
rs11636849	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12438925	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12440211	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12440708	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12441554	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1383315	0.94[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1480503	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1552077	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs1585900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17671556	1.00[CHB][hapmap]
rs17671580	1.00[CHB][hapmap]
rs2032	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2035326	1.00[CHB][hapmap]
rs2229518	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2291166	1.00[CHB][hapmap]
rs2337167	0.89[CEU][hapmap]
rs2337170	0.95[ASN][1000 genomes]
rs2337171	0.90[ASN][1000 genomes]
rs260541	0.95[ASN][1000 genomes]
rs260543	0.90[ASN][1000 genomes]
rs28675809	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2878893	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2878905	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3784356	1.00[CHB][hapmap]
rs4073316	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4362339	0.94[CEU][hapmap]
rs4779670	0.95[CEU][hapmap]
rs4780259	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4780260	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4780263	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6495890	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6495914	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6495927	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6495935	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6495945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7166786	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7168919	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7170406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7171815	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7175819	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7176476	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7176594	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7180387	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs767514	1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs785446	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	esv2422463	chr15:30003189-30215336	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv903754	chr15:30023454-30382120	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv903755	chr15:30036085-30351434	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	esv1851951	chr15:30043659-30178871	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:30016600-30068200	Weak transcription	Brain Germinal Matrix	brain
2	chr15:30021200-30061600	Weak transcription	Colonic Mucosa	Colon
3	chr15:30021400-30097200	Weak transcription	Aorta	Aorta
4	chr15:30025200-30065000	Weak transcription	Fetal Brain Female	brain
5	chr15:30030400-30060800	Weak transcription	Hela-S3	cervix
6	chr15:30030400-30067000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:30042000-30061800	Weak transcription	Pancreas	Pancrea
8	chr15:30044600-30064000	Strong transcription	Fetal Intestine Large	intestine
9	chr15:30046400-30064400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:30047000-30065000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:30047000-30066000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:30049400-30066400	Weak transcription	Small Intestine	intestine
13	chr15:30049600-30061600	Weak transcription	Fetal Brain Male	brain
14	chr15:30050000-30064000	Strong transcription	Placenta	Placenta
15	chr15:30050200-30059400	Weak transcription	Right Atrium	heart
16	chr15:30050200-30070600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:30050400-30064400	Strong transcription	HSMM	muscle
18	chr15:30050600-30063400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:30051000-30058400	Strong transcription	Muscle Satellite Cultured Cells	--
20	chr15:30051400-30058800	Strong transcription	Adipose Nuclei	Adipose
21	chr15:30051400-30060600	Strong transcription	HepG2	liver
22	chr15:30051400-30063600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:30051600-30065600	Strong transcription	NHEK	skin
24	chr15:30051800-30058400	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:30051800-30059200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:30051800-30059200	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr15:30051800-30061800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr15:30051800-30063800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr15:30052000-30058800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr15:30052000-30063800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:30052000-30065600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:30052000-30070600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr15:30052400-30064400	Strong transcription	HUVEC	blood vessel
34	chr15:30052600-30061600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:30052600-30067600	Weak transcription	Stomach Mucosa	stomach
36	chr15:30052600-30089400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:30053000-30064600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr15:30053000-30072600	Weak transcription	Spleen	Spleen
39	chr15:30054200-30058400	Strong transcription	Fetal Kidney	kidney
40	chr15:30054600-30058600	Strong transcription	Fetal Stomach	stomach
41	chr15:30055000-30060600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:30055200-30058800	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr15:30055400-30058400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:30055800-30059800	Strong transcription	Duodenum Mucosa	Duodenum
45	chr15:30056200-30059800	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr15:30056200-30060000	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:30056200-30062200	Strong transcription	HMEC	breast
48	chr15:30056600-30058400	Genic enhancers	H1 Cell Line	embryonic stem cell
49	chr15:30056600-30058400	Genic enhancers	HUES48 Cell Line	embryonic stem cell
50	chr15:30056600-30058600	Genic enhancers	HUES64 Cell Line	embryonic stem cell

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