Variant report

Variant	rs11636849
Chromosome Location	chr15:30012975-30012976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10152681	0.83[CEU][hapmap]
rs10519665	1.00[CHB][hapmap]
rs10775231	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11073205	0.81[EUR][1000 genomes]
rs11632546	0.89[YRI][hapmap]
rs11632848	0.81[AFR][1000 genomes]
rs11638797	0.83[LWK][hapmap];0.83[YRI][hapmap]
rs12438925	0.83[CEU][hapmap];0.93[GIH][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs12901062	0.83[YRI][hapmap]
rs1383315	0.93[CEU][hapmap];0.89[GIH][hapmap];0.81[TSI][hapmap]
rs1480503	0.83[CEU][hapmap];0.89[GIH][hapmap];0.81[TSI][hapmap]
rs1585900	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.89[ASN][1000 genomes]
rs17671556	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs17671580	1.00[CHB][hapmap]
rs2032	0.82[CEU][hapmap]
rs2035326	1.00[CHB][hapmap]
rs2229518	0.83[CEU][hapmap];0.93[GIH][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs2291166	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs2337170	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2337171	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs260526	0.88[LWK][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs260541	0.95[ASN][1000 genomes]
rs260543	0.90[ASN][1000 genomes]
rs2878893	0.83[CEU][hapmap];0.93[GIH][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs2878905	0.83[CEU][hapmap]
rs3784356	1.00[CHB][hapmap]
rs4073316	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs41280056	0.85[AFR][1000 genomes]
rs45505092	0.85[AFR][1000 genomes]
rs4780259	0.83[CEU][hapmap];0.89[GIH][hapmap];0.81[TSI][hapmap]
rs4780260	0.83[CEU][hapmap];0.89[GIH][hapmap]
rs6495890	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6495945	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7168919	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.89[ASN][1000 genomes]
rs7170406	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.89[ASN][1000 genomes]
rs7176476	0.83[CEU][hapmap];0.89[GIH][hapmap];0.81[TSI][hapmap]
rs7180387	0.83[CEU][hapmap];0.89[GIH][hapmap];0.81[TSI][hapmap]
rs767514	0.93[GIH][hapmap];0.81[TSI][hapmap]
rs785445	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[EUR][1000 genomes]
rs785446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456736	chr15:29327352-30208654	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv568675	chr15:29327352-30208654	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv995038	chr15:29744279-30366124	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1038495	chr15:29825859-30351687	Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv542293	chr15:29825859-30351687	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv832944	chr15:29861062-30082057	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv832945	chr15:29932599-30123721	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	esv2422463	chr15:30003189-30215336	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:29989000-30014800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:29989600-30013400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:29989600-30021200	Strong transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:29989600-30027200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:29990000-30014200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:29990000-30016600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:29990200-30013600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:29990200-30016200	Strong transcription	Left Ventricle	heart
9	chr15:29990200-30028400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:29990400-30014200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:29990400-30014400	Strong transcription	Fetal Muscle Trunk	muscle
12	chr15:29990400-30014400	Strong transcription	Placenta	Placenta
13	chr15:29990400-30026400	Strong transcription	Stomach Smooth Muscle	stomach
14	chr15:29990600-30014200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:29990800-30014400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:29991000-30014200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:29991200-30013800	Strong transcription	NH-A	brain
18	chr15:29991200-30014200	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:29991200-30014400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:29991200-30014400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:29991200-30014600	Strong transcription	Osteobl	bone
22	chr15:29991200-30020200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:29991200-30022400	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:29991600-30014400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:29992000-30026600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:29992200-30014800	Weak transcription	Small Intestine	intestine
27	chr15:29993200-30019600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:29995600-30014200	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr15:29996000-30014400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:29996200-30021400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:29998000-30013800	Strong transcription	Brain Anterior Caudate	brain
32	chr15:29999200-30014200	Strong transcription	Brain Hippocampus Middle	brain
33	chr15:30001200-30013400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:30004600-30014200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:30004600-30014400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:30004600-30014400	Strong transcription	Adipose Nuclei	Adipose
37	chr15:30004800-30014000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr15:30005000-30014000	Strong transcription	Fetal Muscle Leg	muscle
39	chr15:30005000-30023000	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr15:30005200-30013200	Strong transcription	HSMM	muscle
41	chr15:30005200-30014400	Strong transcription	Fetal Intestine Large	intestine
42	chr15:30005400-30022800	Strong transcription	HSMMtube	muscle
43	chr15:30006000-30013600	Strong transcription	Hela-S3	cervix
44	chr15:30006000-30014800	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:30006200-30014000	Strong transcription	Fetal Lung	lung
46	chr15:30006400-30013200	Strong transcription	A549	lung
47	chr15:30006600-30014400	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr15:30006600-30014600	Strong transcription	HUVEC	blood vessel
49	chr15:30006800-30018200	Strong transcription	Colon Smooth Muscle	Colon
50	chr15:30007000-30014400	Strong transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links