Variant report

Variant	rs10775481
Chromosome Location	chr18:43900084-43900085
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10853541	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11082523	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs2008211	0.80[CHB][hapmap]
rs4890324	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4890642	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4890643	0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs7232125	0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs8093368	0.80[CHB][hapmap]
rs920781	0.80[CHB][hapmap]
rs9947826	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9958625	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs9958662	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9960377	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43894200-43901800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:43898600-43900800	Weak transcription	Psoas Muscle	Psoas
3	chr18:43899000-43901600	Enhancers	Hela-S3	cervix
4	chr18:43899800-43901600	Enhancers	NHEK	skin
5	chr18:43899800-43905000	Enhancers	HMEC	breast
6	chr18:43900000-43902200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr18:43900000-43903400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links