Variant report

Variant	rs9960377
Chromosome Location	chr18:43901516-43901517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:43901494..43904052-chr18:43904430..43906842,2	MCF-7	breast:
2	chr18:43752736..43755546-chr18:43899946..43902823,2	MCF-7	breast:
3	chr18:43899871..43902503-chr18:43913524..43916220,2	MCF-7	breast:
4	chr18:43895014..43896765-chr18:43901404..43904086,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152242	Chromatin interaction
ENSG00000141622	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10775481	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10853541	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4890324	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4890642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4890643	0.91[ASN][1000 genomes]
rs7232125	0.91[ASN][1000 genomes]
rs9947826	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9958625	0.84[ASN][1000 genomes]
rs9958662	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43894200-43901800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:43899000-43901600	Enhancers	Hela-S3	cervix
3	chr18:43899800-43901600	Enhancers	NHEK	skin
4	chr18:43899800-43905000	Enhancers	HMEC	breast
5	chr18:43900000-43902200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr18:43900000-43903400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr18:43900200-43903200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr18:43900400-43902200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr18:43900600-43902000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr18:43900600-43902800	Enhancers	Osteobl	bone
11	chr18:43900800-43901800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:43900800-43902000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr18:43900800-43902000	Enhancers	HSMM	muscle
14	chr18:43900800-43902200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr18:43900800-43902600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr18:43900800-43903200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr18:43900800-43903200	Enhancers	NH-A	brain
18	chr18:43901000-43901800	Weak transcription	Psoas Muscle	Psoas
19	chr18:43901200-43902200	Weak transcription	A549	lung
20	chr18:43901200-43903200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr18:43901200-43905600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr18:43901400-43902200	Enhancers	Fetal Lung	lung
23	chr18:43901400-43903200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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