Variant report

Variant	rs10776590
Chromosome Location	chr10:49493035-49493036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49419791..49421477-chr10:49492128..49494569,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10745265	0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10776591	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10776592	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs10776594	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs10857554	0.88[CEU][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10857564	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs10857565	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs11101280	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101281	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11101282	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11101285	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1112268	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs11597435	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs11598320	0.87[JPT][hapmap]
rs12358297	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs17780725	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs1881735	0.94[JPT][hapmap]
rs1881737	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs1881740	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1881741	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs1919706	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs1919707	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs1919709	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs1919710	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997365	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2377141	0.81[ASN][1000 genomes]
rs2377142	0.93[ASN][1000 genomes]
rs2377143	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377349	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2590386	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs2590391	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2698758	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2698768	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs2889595	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs4529852	0.93[ASN][1000 genomes]
rs4838404	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs6537559	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7068398	0.88[JPT][hapmap]
rs7095392	0.92[ASN][1000 genomes]
rs7097975	1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898026	0.94[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv550812	chr10:49484698-49524715	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49489200-49493200	ZNF genes & repeats	GM12878-XiMat	blood
2	chr10:49492400-49493600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:49492400-49494000	Enhancers	Dnd41	blood
4	chr10:49492400-49495400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:49492400-49498200	Enhancers	Fetal Thymus	thymus

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