Variant report

Variant	rs1919710
Chromosome Location	chr10:49491942-49491943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10745265	0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs10776589	0.87[EUR][1000 genomes]
rs10776590	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10776591	0.94[ASN][1000 genomes]
rs10776592	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10776594	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10857554	0.94[ASN][1000 genomes]
rs10857564	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs10857565	0.89[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap]
rs11101280	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11101281	0.99[ASN][1000 genomes]
rs11101282	0.94[ASN][1000 genomes]
rs11101285	0.81[GIH][hapmap];0.94[JPT][hapmap]
rs1112268	0.89[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap]
rs11597435	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs11598320	0.86[JPT][hapmap]
rs12358297	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs17697978	1.00[YRI][hapmap]
rs17698002	1.00[YRI][hapmap]
rs17698086	1.00[YRI][hapmap]
rs17780725	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs17836191	1.00[YRI][hapmap]
rs1881735	0.93[CHD][hapmap];0.94[JPT][hapmap]
rs1881737	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs1881740	0.89[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap]
rs1881741	0.87[CHB][hapmap];0.92[JPT][hapmap]
rs1881742	0.90[EUR][1000 genomes]
rs1919706	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs1919707	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs1919709	0.89[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap]
rs1997365	0.94[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2377141	0.81[ASN][1000 genomes]
rs2377142	0.93[ASN][1000 genomes]
rs2377143	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2377349	0.89[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap]
rs2590386	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs2590391	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs2698758	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs2698768	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs2889595	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs3730161	1.00[YRI][hapmap]
rs4529852	0.93[ASN][1000 genomes]
rs4838404	1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs6537559	0.94[CHB][hapmap];0.97[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7068398	0.88[JPT][hapmap]
rs7095392	0.92[ASN][1000 genomes]
rs7097975	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898026	0.94[CHB][hapmap];0.88[CHD][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv550812	chr10:49484698-49524715	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1919710	ANTXRL	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49466800-49492400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:49489200-49493200	ZNF genes & repeats	GM12878-XiMat	blood
3	chr10:49491200-49492400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links