Variant report

Variant	rs17836191
Chromosome Location	chr10:49482961-49482962
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10508902	1.00[ASW][hapmap];0.85[CEU][hapmap]
rs11101279	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17697978	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17698002	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17698086	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs17770456	0.85[CEU][hapmap]
rs17770535	0.85[CEU][hapmap]
rs17770554	0.85[CEU][hapmap]
rs1978997	0.85[CEU][hapmap]
rs2002545	0.91[ASN][1000 genomes]
rs3730161	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[YRI][hapmap]
rs4838403	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7071413	0.87[CHD][hapmap];0.81[GIH][hapmap];0.80[ASN][1000 genomes]
rs7081140	0.99[ASN][1000 genomes]
rs7091218	1.00[CHB][hapmap];0.81[JPT][hapmap];0.98[ASN][1000 genomes]
rs7097975	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv895367	chr10:49333754-49491047	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv895370	chr10:49421173-49484698	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49466800-49492400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:49480600-49484800	Enhancers	GM12878-XiMat	blood
3	chr10:49481400-49483200	Active TSS	Brain Anterior Caudate	brain
4	chr10:49481800-49483400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:49482200-49483000	Enhancers	HepG2	liver
6	chr10:49482200-49483200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr10:49482400-49483200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr10:49482400-49483400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr10:49482600-49483000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:49482600-49483000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:49482600-49483000	Active TSS	Brain Cingulate Gyrus	brain
12	chr10:49482600-49483000	Enhancers	Fetal Thymus	thymus
13	chr10:49482600-49483000	Enhancers	HUVEC	blood vessel
14	chr10:49482600-49483200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:49482600-49483200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:49482600-49483200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:49482600-49483200	Enhancers	Aorta	Aorta
18	chr10:49482600-49483200	Enhancers	Fetal Lung	lung
19	chr10:49482600-49483400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:49482600-49484800	Enhancers	Dnd41	blood
21	chr10:49482800-49483000	Weak transcription	Right Atrium	heart

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