Variant report

Variant	rs4838403
Chromosome Location	chr10:49479817-49479818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10508902	0.85[CEU][hapmap]
rs11101279	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17009551	0.83[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs17697978	0.85[CEU][hapmap]
rs17698002	0.85[CEU][hapmap]
rs17698086	0.85[CEU][hapmap]
rs17770456	0.85[CEU][hapmap]
rs17770535	0.85[CEU][hapmap]
rs17770554	0.85[CEU][hapmap]
rs17836191	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1978997	0.85[CEU][hapmap]
rs3730161	0.85[CEU][hapmap]
rs7071413	0.81[MEX][hapmap]
rs7096711	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895366	chr10:49299274-49576454	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv895367	chr10:49333754-49491047	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv895368	chr10:49381635-49551560	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv467190	chr10:49402084-49576878	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv550811	chr10:49402084-49576878	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv895370	chr10:49421173-49484698	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49466800-49492400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:49475000-49482600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:49475000-49482600	Weak transcription	Right Atrium	heart
4	chr10:49475000-49482800	Weak transcription	Pancreas	Pancrea
5	chr10:49478000-49482600	Weak transcription	Fetal Thymus	thymus
6	chr10:49478400-49480200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:49478400-49482600	Weak transcription	Dnd41	blood
8	chr10:49478800-49480000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:49478800-49480200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr10:49478800-49480200	Enhancers	Brain Hippocampus Middle	brain
11	chr10:49479000-49480400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr10:49479200-49480000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:49479200-49480400	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:49479400-49480000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:49479400-49480400	Active TSS	Brain Anterior Caudate	brain
16	chr10:49479600-49480400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:49479800-49480200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr10:49479800-49482400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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