Variant report

Variant	rs10778266
Chromosome Location	chr12:103983543-103983544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10454504	0.96[EUR][1000 genomes]
rs10745975	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10778265	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861042	0.88[YRI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861043	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11111671	0.98[EUR][1000 genomes]
rs11111680	1.00[CEU][hapmap]
rs11832217	1.00[CEU][hapmap]
rs11836449	1.00[CEU][hapmap];0.88[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12303315	1.00[CEU][hapmap]
rs12319902	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs903186	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391153	chr12:103983229-103989747	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103983000-103984200	Enhancers	GM12878-XiMat	blood
2	chr12:103983400-103984000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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