Variant report
| Variant | rs11111680 |
|---|---|
| Chromosome Location | chr12:104009252-104009253 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10454504 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10745975 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs10778265 | 0.96[EUR][1000 genomes] |
| rs10778266 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs10861042 | 0.96[EUR][1000 genomes] |
| rs10861043 | 0.98[EUR][1000 genomes] |
| rs11111671 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11832217 | 1.00[CEU][hapmap] |
| rs11836449 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs12303315 | 1.00[CEU][hapmap] |
| rs12319902 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs903186 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1052275 | chr12:104008918-104044241 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
