Variant report

Variant	rs10778273
Chromosome Location	chr12:104058144-104058145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10745977	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10745978	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10861070	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11111708	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3752879	0.88[EUR][1000 genomes]
rs4497503	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7296829	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs755598	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs903184	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv865	chr12:104030102-104074864	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104033200-104062200	Weak transcription	Spleen	Spleen
2	chr12:104047000-104059400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:104052200-104059200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links