Variant report

Variant	rs10778356
Chromosome Location	chr12:105299342-105299343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105297810..105300145-chr12:105300569..105303265,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10507183	0.89[ASN][1000 genomes]
rs10507185	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778354	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10861278	0.88[ASN][1000 genomes]
rs10861280	0.85[ASN][1000 genomes]
rs10861282	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10861291	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861293	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10861295	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861297	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11112208	0.89[ASN][1000 genomes]
rs11112221	0.92[ASN][1000 genomes]
rs11112234	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12230637	0.94[ASN][1000 genomes]
rs17829927	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2047126	0.87[ASN][1000 genomes]
rs2245695	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2249941	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2252843	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2264883	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2264893	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453163	0.89[ASN][1000 genomes]
rs2453164	0.89[ASN][1000 genomes]
rs2453169	0.87[ASN][1000 genomes]
rs2463430	0.84[ASN][1000 genomes]
rs2468088	0.83[ASN][1000 genomes]
rs2468094	0.85[ASN][1000 genomes]
rs2468096	0.88[ASN][1000 genomes]
rs2468098	0.88[ASN][1000 genomes]
rs2468103	0.89[ASN][1000 genomes]
rs2468107	0.89[ASN][1000 genomes]
rs2468108	0.89[ASN][1000 genomes]
rs2468336	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2468338	0.87[ASN][1000 genomes]
rs2468339	0.87[ASN][1000 genomes]
rs2468341	0.89[ASN][1000 genomes]
rs2468342	0.85[ASN][1000 genomes]
rs2468343	0.89[ASN][1000 genomes]
rs2468344	0.83[ASN][1000 genomes]
rs2468345	0.85[ASN][1000 genomes]
rs2468396	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2468397	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2642119	0.89[ASN][1000 genomes]
rs2642120	0.89[ASN][1000 genomes]
rs2730294	0.89[ASN][1000 genomes]
rs4130161	0.91[ASN][1000 genomes]
rs4257060	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4537841	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4630370	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4644704	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57987047	0.82[EUR][1000 genomes]
rs7959777	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7961766	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7971260	0.89[ASN][1000 genomes]
rs7971392	0.91[ASN][1000 genomes]
rs9705471	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105278600-105313800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr12:105284600-105309000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:105290800-105331600	Weak transcription	Gastric	stomach
4	chr12:105293400-105302600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:105293400-105310000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr12:105293600-105303800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:105293600-105321600	Weak transcription	A549	lung
8	chr12:105297400-105302400	Weak transcription	Placenta	Placenta
9	chr12:105297400-105306600	Weak transcription	Ovary	ovary
10	chr12:105297400-105323600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr12:105297600-105323400	Weak transcription	Aorta	Aorta
12	chr12:105297800-105313000	Weak transcription	Fetal Stomach	stomach
13	chr12:105298200-105300000	Weak transcription	Stomach Mucosa	stomach
14	chr12:105298200-105303200	Weak transcription	Adipose Nuclei	Adipose
15	chr12:105298200-105303800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr12:105298200-105314600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr12:105298400-105302000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr12:105298600-105300000	Weak transcription	Pancreas	Pancrea
19	chr12:105298800-105299800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:105298800-105300000	Weak transcription	Liver	Liver

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