Variant report

Variant	rs11112221
Chromosome Location	chr12:105272303-105272304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10507183	0.85[ASN][1000 genomes]
rs10507185	0.92[ASN][1000 genomes]
rs10778354	0.94[ASN][1000 genomes]
rs10778356	0.92[ASN][1000 genomes]
rs10861278	0.80[ASN][1000 genomes]
rs10861280	0.81[ASN][1000 genomes]
rs10861282	0.90[ASN][1000 genomes]
rs10861291	0.92[ASN][1000 genomes]
rs10861293	0.94[ASN][1000 genomes]
rs10861295	0.92[ASN][1000 genomes]
rs10861297	0.86[ASN][1000 genomes]
rs11112208	0.81[ASN][1000 genomes]
rs11112234	0.94[ASN][1000 genomes]
rs12230637	0.90[ASN][1000 genomes]
rs17036468	0.86[AFR][1000 genomes]
rs17829927	0.90[ASN][1000 genomes]
rs2245695	0.91[ASN][1000 genomes]
rs2249941	0.91[ASN][1000 genomes]
rs2252843	0.90[ASN][1000 genomes]
rs2264883	0.91[ASN][1000 genomes]
rs2264893	0.92[ASN][1000 genomes]
rs2453163	0.81[ASN][1000 genomes]
rs2453164	0.81[ASN][1000 genomes]
rs2453169	0.83[ASN][1000 genomes]
rs2468094	0.81[ASN][1000 genomes]
rs2468096	0.80[ASN][1000 genomes]
rs2468098	0.80[ASN][1000 genomes]
rs2468103	0.81[ASN][1000 genomes]
rs2468107	0.81[ASN][1000 genomes]
rs2468108	0.81[ASN][1000 genomes]
rs2468336	0.92[ASN][1000 genomes]
rs2468341	0.81[ASN][1000 genomes]
rs2468343	0.81[ASN][1000 genomes]
rs2468397	0.89[ASN][1000 genomes]
rs2642119	0.81[ASN][1000 genomes]
rs2642120	0.81[ASN][1000 genomes]
rs2730294	0.81[ASN][1000 genomes]
rs4130161	0.84[ASN][1000 genomes]
rs4257060	0.82[ASN][1000 genomes]
rs4537841	0.85[ASN][1000 genomes]
rs4630370	0.86[ASN][1000 genomes]
rs4644704	0.92[ASN][1000 genomes]
rs73383457	0.86[AFR][1000 genomes]
rs7959777	0.94[ASN][1000 genomes]
rs7961766	0.94[ASN][1000 genomes]
rs7971260	0.82[ASN][1000 genomes]
rs7971392	0.83[ASN][1000 genomes]
rs9705471	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105238400-105280000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr12:105259400-105277800	Weak transcription	Pancreas	Pancrea
3	chr12:105260800-105280200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr12:105261400-105278000	Weak transcription	Gastric	stomach
5	chr12:105267800-105279600	Weak transcription	A549	lung
6	chr12:105267800-105284200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:105269800-105277000	Weak transcription	Liver	Liver
8	chr12:105269800-105277400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr12:105271200-105276800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links