Variant report

Variant	rs17036468
Chromosome Location	chr12:105283577-105283578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11112221	0.86[AFR][1000 genomes]
rs7301851	1.00[EUR][1000 genomes]
rs73383457	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383489	1.00[EUR][1000 genomes]
rs73399910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv899498	chr12:105173598-105461620	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105267800-105284200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:105273800-105288200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr12:105275400-105297000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr12:105278200-105284400	Weak transcription	Aorta	Aorta
5	chr12:105278200-105284400	Weak transcription	Gastric	stomach
6	chr12:105278400-105293200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:105278600-105313800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr12:105280600-105284400	Weak transcription	NHDF-Ad	bronchial
9	chr12:105281200-105284200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr12:105281800-105283600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:105281800-105283600	Enhancers	Liver	Liver
12	chr12:105282200-105284800	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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