Variant report

Variant	rs10778385
Chromosome Location	chr12:105701320-105701321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10083056	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10083061	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10735402	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10778384	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778390	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10778391	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861386	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861387	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861390	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10861391	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861393	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10861395	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10861397	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11112459	0.96[ASN][1000 genomes]
rs11112460	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11112468	0.83[CEU][hapmap]
rs12822081	0.84[CEU][hapmap]
rs1344780	0.94[ASN][1000 genomes]
rs1821235	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2163719	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6539204	0.94[ASN][1000 genomes]
rs6539206	0.80[ASN][1000 genomes]
rs7299882	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7300095	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7300376	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7300512	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7305292	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7305413	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7961016	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9669597	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3394212	chr12:105693734-105708035	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
4	esv3358347	chr12:105693757-105707693	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105692200-105703600	Weak transcription	A549	lung
2	chr12:105692200-105708000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:105695400-105708200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:105695800-105709200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:105696200-105709400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:105698200-105702400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:105700000-105704000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr12:105700200-105702200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:105701200-105701800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr12:105701200-105701800	Enhancers	HUVEC	blood vessel
11	chr12:105701200-105702200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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