Variant report
| Variant | rs6539204 |
|---|---|
| Chromosome Location | chr12:105694020-105694021 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10735400 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10746014 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10746015 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10778384 | 0.94[ASN][1000 genomes] |
| rs10778385 | 0.94[ASN][1000 genomes] |
| rs10861381 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10861382 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10861383 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10861384 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11112453 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11112457 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11112458 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11112459 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1344780 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1821235 | 0.94[ASN][1000 genomes] |
| rs6539203 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6539206 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7298167 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7302933 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7966786 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899499 | chr12:105616297-105722529 | Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv510589 | chr12:105670071-105743755 | Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3394212 | chr12:105693734-105708035 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS | lncRNA | n/a | inside rSNPs | diseases |
| 4 | esv3358347 | chr12:105693757-105707693 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:105692200-105703600 | Weak transcription | A549 | lung |
| 2 | chr12:105692200-105708000 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
