Variant report

Variant	rs7298167
Chromosome Location	chr12:105690259-105690260
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105682564..105686688-chr12:105688570..105690485,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10083056	0.97[ASN][1000 genomes]
rs10083061	0.97[ASN][1000 genomes]
rs10083199	0.96[ASN][1000 genomes]
rs10735400	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735402	0.96[ASN][1000 genomes]
rs10746014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746015	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778390	0.97[ASN][1000 genomes]
rs10778391	0.97[ASN][1000 genomes]
rs10861381	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861383	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861384	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861386	0.99[ASN][1000 genomes]
rs10861387	0.99[ASN][1000 genomes]
rs10861390	0.97[ASN][1000 genomes]
rs10861391	0.97[ASN][1000 genomes]
rs10861393	0.97[ASN][1000 genomes]
rs10861395	0.97[ASN][1000 genomes]
rs10861397	0.97[ASN][1000 genomes]
rs11112453	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112458	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112459	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11112460	0.97[ASN][1000 genomes]
rs1344780	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2163719	0.97[ASN][1000 genomes]
rs6539203	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6539204	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6539206	0.94[EUR][1000 genomes]
rs7299882	0.97[ASN][1000 genomes]
rs7300095	0.97[ASN][1000 genomes]
rs7300376	0.97[ASN][1000 genomes]
rs7300512	0.97[ASN][1000 genomes]
rs7302933	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305292	0.97[ASN][1000 genomes]
rs7305413	0.97[ASN][1000 genomes]
rs7311273	0.97[ASN][1000 genomes]
rs7312484	0.95[ASN][1000 genomes]
rs7961016	0.97[ASN][1000 genomes]
rs7966786	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9669597	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv510589	chr12:105670071-105743755	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105687000-105692200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:105688400-105692000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:105688600-105690800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr12:105688800-105690800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr12:105689000-105691400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr12:105689000-105691600	Weak transcription	A549	lung
7	chr12:105689600-105690800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:105689800-105690800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr12:105689800-105690800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:105690000-105690400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr12:105690000-105691000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr12:105690200-105690800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:105690200-105690800	Enhancers	Brain Germinal Matrix	brain

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