Variant report

Variant	rs10778406
Chromosome Location	chr12:105847546-105847547
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10746034	0.91[EUR][1000 genomes]
rs1358220	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs2116678	0.93[EUR][1000 genomes]
rs2888847	0.92[EUR][1000 genomes]
rs7953438	0.91[EUR][1000 genomes]
rs7955724	0.92[EUR][1000 genomes]
rs7955973	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs7972634	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs9971736	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105840400-105848600	Weak transcription	NHEK	skin
2	chr12:105840600-105848400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:105841600-105850400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:105845400-105848400	Weak transcription	HUVEC	blood vessel
5	chr12:105845800-105850600	Weak transcription	HSMM	muscle
6	chr12:105845800-105850800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr12:105845800-105850800	Weak transcription	HSMMtube	muscle
8	chr12:105846000-105850600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr12:105846800-105847600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:105847000-105850800	Weak transcription	Aorta	Aorta
11	chr12:105847400-105848800	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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