Variant report

Variant	rs1358220
Chromosome Location	chr12:105837746-105837747
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000078246	Chromatin interaction
ENSG00000111206	Chromatin interaction
ENSG00000171792	Chromatin interaction
ENSG00000074590	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10746034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778406	0.92[EUR][1000 genomes]
rs11112524	0.84[AMR][1000 genomes]
rs1821232	0.80[AMR][1000 genomes]
rs1821233	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2082371	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2116678	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888847	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7953438	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955724	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7965043	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7972634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181668	0.84[ASN][1000 genomes]
rs9971736	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899501	chr12:105819046-105950801	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1045689	chr12:105836970-105879110	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105828600-105838200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:105832800-105837800	Weak transcription	Gastric	stomach
3	chr12:105836600-105840600	Enhancers	HSMMtube	muscle
4	chr12:105836800-105840200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr12:105837000-105839600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr12:105837000-105840400	Enhancers	HSMM	muscle
7	chr12:105837200-105837800	Enhancers	Fetal Intestine Large	intestine
8	chr12:105837200-105837800	Enhancers	Fetal Intestine Small	intestine
9	chr12:105837200-105838000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:105837200-105840000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:105837400-105838600	Flanking Active TSS	Hela-S3	cervix
12	chr12:105837400-105838800	Flanking Active TSS	A549	lung
13	chr12:105837400-105839200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr12:105837400-105840400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:105837400-105840600	Enhancers	HUVEC	blood vessel
16	chr12:105837600-105838200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:105837600-105838200	Enhancers	Placenta	Placenta
18	chr12:105837600-105840000	Enhancers	Fetal Muscle Leg	muscle
19	chr12:105837600-105840400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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