Variant report

Variant	rs10779402
Chromosome Location	chr1:220454174-220454175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220454133..220455023-chr1:220699410..220700032,3	MCF-7	breast:
2	chr1:220454082..220455024-chr1:220714990..220715582,2	MCF-7	breast:
3	chr1:220454085..220454972-chr1:220949753..220950641,2	K562	blood:
4	chr1:220391829..220392619-chr1:220454152..220454910,2	MCF-7	breast:
5	chr1:220454099..220454843-chr1:220906534..220907082,2	MCF-7	breast:
6	chr1:220453040..220456116-chr1:220457163..220460611,3	K562	blood:
7	chr1:220446026..220449283-chr1:220451004..220455196,4	K562	blood:
8	chr1:220454114..220454784-chr1:220906119..220907075,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2814497	0.88[JPT][hapmap]
rs6691509	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10779402	LSDP5	trans	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220448200-220454200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:220448200-220455000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:220449800-220455800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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