Variant report

Variant	rs10779559
Chromosome Location	chr1:211646660-211646661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10157576	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10863900	0.83[EUR][1000 genomes]
rs11119750	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11583557	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1578838	0.86[EUR][1000 genomes]
rs4951753	0.86[EUR][1000 genomes]
rs894985	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211643600-211647200	Weak transcription	K562	blood
2	chr1:211643600-211656200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:211643800-211646800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr1:211643800-211647200	Weak transcription	Gastric	stomach
5	chr1:211643800-211647200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr1:211643800-211647200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:211643800-211647200	Weak transcription	A549	lung
8	chr1:211643800-211647400	Weak transcription	Fetal Muscle Leg	muscle
9	chr1:211643800-211647400	Weak transcription	Psoas Muscle	Psoas
10	chr1:211643800-211647400	Weak transcription	Right Atrium	heart
11	chr1:211643800-211647400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr1:211643800-211647600	Weak transcription	Adipose Nuclei	Adipose
13	chr1:211643800-211652400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:211644000-211646800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:211646200-211647400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links