Variant report

Variant	rs10157576
Chromosome Location	chr1:211659824-211659825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10779559	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10863900	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11119750	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583557	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1578838	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951750	0.81[ASN][1000 genomes]
rs4951753	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7544195	0.97[ASN][1000 genomes]
rs894984	0.81[ASN][1000 genomes]
rs894985	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211647800-211664600	Weak transcription	Gastric	stomach
2	chr1:211648000-211665600	Weak transcription	Right Atrium	heart
3	chr1:211657000-211663000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:211657600-211663800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:211658200-211663000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:211659000-211661000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:211659200-211661000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:211659200-211666800	Weak transcription	Fetal Heart	heart
9	chr1:211659200-211687600	Weak transcription	Spleen	Spleen
10	chr1:211659400-211663000	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:211659600-211661000	Weak transcription	Fetal Muscle Trunk	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links