Variant report

Variant	rs894984
Chromosome Location	chr1:211675125-211675126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10157576	0.81[ASN][1000 genomes]
rs10863900	0.81[ASN][1000 genomes]
rs11119750	0.81[ASN][1000 genomes]
rs1578838	0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs4951750	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4951753	0.81[ASN][1000 genomes]
rs894985	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211659200-211687600	Weak transcription	Spleen	Spleen
2	chr1:211673800-211675200	Weak transcription	Thymus	Thymus
3	chr1:211674200-211676200	Enhancers	Rectal Smooth Muscle	rectum
4	chr1:211674400-211676200	Enhancers	Fetal Stomach	stomach
5	chr1:211674600-211675800	Enhancers	Fetal Brain Female	brain
6	chr1:211674600-211676200	Bivalent Enhancer	Fetal Lung	lung
7	chr1:211674600-211676400	Enhancers	Fetal Muscle Leg	muscle
8	chr1:211674800-211675400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:211675000-211675200	Bivalent Enhancer	K562	blood
10	chr1:211675000-211676200	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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