Variant report

Variant	rs10780979
Chromosome Location	chr9:73474170-73474171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10118762	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1034538	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10780973	0.89[ASN][1000 genomes]
rs1415225	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2210938	0.93[EUR][1000 genomes]
rs4478638	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6560155	0.90[ASN][1000 genomes]
rs7031089	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7032799	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7850924	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7873256	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73427600-73483400	Weak transcription	Aorta	Aorta
2	chr9:73450600-73477600	Weak transcription	Ovary	ovary
3	chr9:73455600-73480600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73457200-73485200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:73457800-73480600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:73461400-73482000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:73466200-73483000	Weak transcription	Fetal Heart	heart
8	chr9:73470200-73475000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:73472800-73475600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:73473400-73474200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:73473600-73474200	Enhancers	Fetal Kidney	kidney
12	chr9:73473600-73474200	Enhancers	Gastric	stomach
13	chr9:73473600-73481800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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