Variant report

Variant	rs10782270
Chromosome Location	chr6:140018024-140018025
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140016247..140019706-chr6:140025179..140028113,3	K562	blood:
2	chr6:139693240..139695789-chr6:140014920..140018610,3	K562	blood:
3	chr6:140017766..140019321-chr6:140022957..140024761,2	K562	blood:
4	chr6:139694131..139695789-chr6:140016107..140019302,3	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1936212	0.81[EUR][1000 genomes]
rs1936213	0.85[JPT][hapmap]
rs1986629	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2327978	0.83[ASN][1000 genomes]
rs4421208	0.85[JPT][hapmap]
rs6570371	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6912263	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6918560	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7739545	0.85[JPT][hapmap]
rs7742530	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7761087	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7761526	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7762375	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9321751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9373245	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376448	0.87[ASN][1000 genomes]
rs9376449	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376450	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9376453	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9389712	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9389713	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9403105	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9403108	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv516840	chr6:139960833-140053704	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140015800-140019800	Weak transcription	Liver	Liver
2	chr6:140017000-140019800	Weak transcription	Adipose Nuclei	Adipose
3	chr6:140017200-140019600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:140017600-140018600	Active TSS	Primary monocytes fromperipheralblood	blood
5	chr6:140017600-140018600	Active TSS	Monocytes-CD14+_RO01746	blood
6	chr6:140017600-140020000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:140017800-140019600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:140018000-140018600	Active TSS	Primary T cells from cord blood	blood
9	chr6:140018000-140018600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:140018000-140018800	Active TSS	Primary neutrophils fromperipheralblood	blood

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