Variant report

Variant	rs1936213
Chromosome Location	chr6:140084551-140084552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140081301..140083675-chr6:140083815..140085974,2	MCF-7	breast:
2	chr6:140082225..140084956-chr6:140088541..140090075,2	K562	blood:
3	chr6:140028951..140031620-chr6:140084219..140086898,2	K562	blood:
4	chr6:140055856..140059094-chr6:140083948..140086975,3	K562	blood:
5	chr6:139694058..139697860-chr6:140083167..140088670,5	MCF-7	breast:
6	chr6:140077496..140081190-chr6:140083108..140086275,5	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10782270	0.85[JPT][hapmap]
rs1936212	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1936215	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301318	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4421208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570371	0.92[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6912263	0.92[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs6918560	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7739545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742530	0.83[EUR][1000 genomes]
rs7761087	0.85[EUR][1000 genomes]
rs7761526	0.86[EUR][1000 genomes]
rs7762375	0.85[JPT][hapmap]
rs9321751	0.89[CEU][hapmap];0.85[JPT][hapmap]
rs9376449	0.83[EUR][1000 genomes]
rs9376459	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389712	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs9389713	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9403105	0.85[JPT][hapmap]
rs9403108	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140070200-140085200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:140073000-140089400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:140075000-140085400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:140076000-140085200	Weak transcription	Left Ventricle	heart
5	chr6:140076400-140085000	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:140076400-140085200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:140076800-140085000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:140076800-140085200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:140077000-140085000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:140077000-140085800	Weak transcription	Fetal Kidney	kidney
11	chr6:140077200-140085000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:140077400-140085800	Weak transcription	Pancreas	Pancrea
13	chr6:140079400-140085200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:140079600-140085000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:140079600-140085400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:140079800-140085000	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:140079800-140090400	Weak transcription	Aorta	Aorta
18	chr6:140081200-140085400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:140081400-140085600	Weak transcription	Ovary	ovary
20	chr6:140082400-140085000	Weak transcription	Right Atrium	heart
21	chr6:140082400-140085600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:140082400-140089400	Weak transcription	Psoas Muscle	Psoas
23	chr6:140083000-140086600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr6:140083200-140084600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:140083200-140085200	Enhancers	Osteobl	bone
26	chr6:140083200-140085400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:140083200-140085800	Enhancers	NHDF-Ad	bronchial
28	chr6:140083200-140086400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr6:140083200-140086400	Enhancers	Fetal Heart	heart
30	chr6:140083200-140087400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:140083200-140088200	Enhancers	HSMM	muscle
32	chr6:140083400-140084600	Enhancers	Adipose Nuclei	Adipose
33	chr6:140083400-140085400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:140083400-140085400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:140083400-140088200	Enhancers	HSMMtube	muscle
36	chr6:140083400-140090200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:140083600-140085800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:140083600-140086200	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr6:140083600-140087800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:140083600-140087800	Enhancers	Hela-S3	cervix
41	chr6:140083600-140087800	Enhancers	HUVEC	blood vessel
42	chr6:140083600-140088200	Enhancers	K562	blood
43	chr6:140083800-140085000	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr6:140083800-140085000	Weak transcription	Fetal Lung	lung
45	chr6:140083800-140085200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:140083800-140085800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr6:140083800-140085800	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:140083800-140087600	Enhancers	NH-A	brain
49	chr6:140083800-140087800	Enhancers	NHLF	lung
50	chr6:140084000-140084600	Enhancers	A549	lung

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