Variant report

Variant	rs1936215
Chromosome Location	chr6:140064239-140064240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140062822..140064897-chr6:140067790..140070616,2	K562	blood:
2	chr6:140059888..140061775-chr6:140062936..140065561,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10782270	0.86[JPT][hapmap]
rs1936212	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1936213	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301318	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4421208	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570371	0.86[ASW][hapmap];0.85[CEU][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6912263	0.85[CEU][hapmap];0.90[GIH][hapmap];0.85[JPT][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]
rs6918560	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7739545	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742530	0.85[EUR][1000 genomes]
rs7761087	0.87[EUR][1000 genomes]
rs7761526	0.88[EUR][1000 genomes]
rs7762375	0.86[JPT][hapmap]
rs9321751	0.81[CEU][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs9376449	0.85[EUR][1000 genomes]
rs9376459	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9389712	0.86[JPT][hapmap]
rs9389713	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9403105	0.85[JPT][hapmap]
rs9403108	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140054800-140072000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:140055000-140064600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:140060600-140065400	Weak transcription	Adipose Nuclei	Adipose
4	chr6:140062800-140065800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:140063400-140064400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:140063400-140064800	Enhancers	HSMMtube	muscle
7	chr6:140063400-140066600	Enhancers	NHDF-Ad	bronchial
8	chr6:140063600-140065400	Enhancers	HepG2	liver
9	chr6:140063600-140066200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:140063600-140067200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:140063800-140066000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:140063800-140066000	Enhancers	HSMM	muscle
13	chr6:140063800-140066400	Enhancers	NHLF	lung
14	chr6:140063800-140069000	Weak transcription	Fetal Heart	heart
15	chr6:140064000-140065000	Enhancers	A549	lung
16	chr6:140064000-140065400	Enhancers	Ovary	ovary
17	chr6:140064000-140065400	Enhancers	Hela-S3	cervix
18	chr6:140064000-140065800	Enhancers	NH-A	brain
19	chr6:140064000-140065800	Enhancers	Osteobl	bone
20	chr6:140064000-140066600	Enhancers	HUVEC	blood vessel
21	chr6:140064200-140064400	Enhancers	Small Intestine	intestine
22	chr6:140064200-140065600	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:140064200-140065600	Enhancers	HMEC	breast
24	chr6:140064200-140065600	Enhancers	NHEK	skin
25	chr6:140064200-140066200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:140064200-140066400	Enhancers	Fetal Kidney	kidney
27	chr6:140064200-140066600	Enhancers	Fetal Intestine Small	intestine
28	chr6:140064200-140068400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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