Variant report

Variant	rs1078270
Chromosome Location	chr6:39178078-39178079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39168499..39172318-chr6:39172546..39178479,7	K562	blood:
2	chr6:39172344..39173847-chr6:39177275..39179261,2	K562	blood:
3	chr6:39168913..39171459-chr6:39176339..39178436,2	MCF-7	breast:
4	chr6:39176890..39181297-chr6:39193958..39200095,7	K562	blood:
5	chr6:39169873..39175586-chr6:39175633..39178676,8	K562	blood:
6	chr6:39176203..39179495-chr6:39195269..39198252,3	MCF-7	breast:
7	chr6:39177427..39182769-chr6:39182785..39188256,10	K562	blood:

Variant related genes	Relation type
ENSG00000164626	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10305453	1.00[EUR][1000 genomes]
rs36069999	1.00[EUR][1000 genomes]
rs57038524	1.00[EUR][1000 genomes]
rs6458104	1.00[EUR][1000 genomes]
rs6904738	1.00[EUR][1000 genomes]
rs7751124	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39150600-39193800	Genic enhancers	Fetal Intestine Small	intestine
2	chr6:39156800-39193400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:39163800-39192800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:39166400-39178200	Enhancers	Placenta	Placenta
5	chr6:39167400-39178600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr6:39169400-39193600	Enhancers	Liver	Liver
7	chr6:39170000-39179400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:39170400-39179200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:39170800-39179200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:39171000-39179200	Genic enhancers	K562	blood
11	chr6:39171400-39179200	Enhancers	Esophagus	oesophagus
12	chr6:39172400-39178600	Enhancers	Lung	lung
13	chr6:39174000-39179000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:39174000-39179200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:39174000-39179400	Enhancers	Fetal Lung	lung
16	chr6:39174200-39195000	Enhancers	Stomach Mucosa	stomach
17	chr6:39174600-39178800	Enhancers	Fetal Intestine Large	intestine
18	chr6:39175200-39178400	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:39175200-39179400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:39175400-39178200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:39175400-39178600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:39175600-39178200	Enhancers	Fetal Stomach	stomach
23	chr6:39175600-39178400	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:39175600-39178600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:39175600-39178800	Enhancers	Colonic Mucosa	Colon
26	chr6:39175800-39178200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:39175800-39179200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:39175800-39179400	Enhancers	Pancreas	Pancrea
29	chr6:39176000-39178200	Enhancers	Primary B cells from cord blood	blood
30	chr6:39176000-39179200	Enhancers	Fetal Muscle Trunk	muscle
31	chr6:39176200-39178400	Enhancers	Fetal Muscle Leg	muscle
32	chr6:39176600-39178200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:39176600-39178400	Weak transcription	Small Intestine	intestine
34	chr6:39176800-39178200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:39177000-39178200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:39177000-39178200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr6:39177000-39178400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr6:39177000-39178400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:39177000-39178400	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr6:39177000-39178600	Enhancers	GM12878-XiMat	blood
41	chr6:39177000-39179200	Enhancers	H9 Cell Line	embryonic stem cell
42	chr6:39177000-39179400	Enhancers	Adipose Nuclei	Adipose
43	chr6:39177000-39179600	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr6:39177000-39179600	Enhancers	Spleen	Spleen
45	chr6:39177000-39180400	Enhancers	Ovary	ovary
46	chr6:39177200-39178200	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr6:39177200-39178200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr6:39177200-39178200	Enhancers	Primary T cells fromperipheralblood	blood
49	chr6:39177200-39178200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
50	chr6:39177200-39178200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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