Variant report

Variant	rs6904738
Chromosome Location	chr6:39202958-39202959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10305453	1.00[EUR][1000 genomes]
rs1078270	1.00[EUR][1000 genomes]
rs36069999	1.00[EUR][1000 genomes]
rs57038524	1.00[EUR][1000 genomes]
rs6458104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751124	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830644	chr6:39116530-39325980	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1022974	chr6:39120271-39277553	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39199400-39207200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:39200200-39207200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:39200400-39207000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:39200800-39207000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:39201200-39207000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:39201400-39207200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:39201600-39205200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:39201600-39207000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:39201600-39207000	Weak transcription	Fetal Intestine Small	intestine
10	chr6:39201600-39207200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:39201800-39207000	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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