Variant report

Variant	rs10784414
Chromosome Location	chr12:64921819-64921820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10459260	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11175430	0.86[EUR][1000 genomes]
rs11175443	0.83[EUR][1000 genomes]
rs11175444	0.84[EUR][1000 genomes]
rs4964109	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs6581575	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7312250	0.87[EUR][1000 genomes]
rs7969932	0.96[CEU][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7972780	0.92[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64912400-64927600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64915000-64922400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:64916600-64925400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr12:64916800-64922400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:64916800-64925400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr12:64916800-64925400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr12:64916800-64925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr12:64917000-64925600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr12:64917400-64922400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:64919800-64926600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:64920200-64922400	Weak transcription	Fetal Muscle Leg	muscle
12	chr12:64921200-64922400	Weak transcription	NHDF-Ad	bronchial
13	chr12:64921200-64922600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:64921800-64923600	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links