Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64924777..64926411-chr12:64929381..64931749,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10506538	0.88[ASN][1000 genomes]
rs10784414	0.84[CEU][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11175429	0.94[ASN][1000 genomes]
rs11175430	0.89[EUR][1000 genomes]
rs11175442	0.82[EUR][1000 genomes]
rs11175443	0.87[EUR][1000 genomes]
rs11175444	0.88[EUR][1000 genomes]
rs12317855	0.94[ASN][1000 genomes]
rs12809605	0.88[ASN][1000 genomes]
rs34027433	0.88[ASN][1000 genomes]
rs35112648	0.88[ASN][1000 genomes]
rs35731857	0.88[ASN][1000 genomes]
rs4964109	0.81[CEU][hapmap];0.92[EUR][1000 genomes]
rs6581575	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66814497	0.94[ASN][1000 genomes]
rs7312250	0.91[EUR][1000 genomes]
rs73124191	0.81[ASN][1000 genomes]
rs7969932	0.88[CEU][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7972780	0.81[CEU][hapmap];0.91[EUR][1000 genomes]
rs7973646	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64912400-64927600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64919800-64926600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:64922800-64926800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:64925400-64927400	Enhancers	Fetal Muscle Leg	muscle
5	chr12:64925600-64926400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:64926000-64926800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr12:64926000-64927200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:64926200-64926600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:64926200-64926600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:64926200-64926800	Weak transcription	HSMMtube	muscle

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