Variant report

Variant	rs34027433
Chromosome Location	chr12:64944942-64944943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10459260	0.88[ASN][1000 genomes]
rs10506538	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175429	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12315614	0.88[EUR][1000 genomes]
rs12317855	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12809605	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112648	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35731857	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6581575	0.82[ASN][1000 genomes]
rs66814497	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73124191	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7969932	0.88[ASN][1000 genomes]
rs7973646	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64943000-64946000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr12:64943400-64946400	Enhancers	Fetal Muscle Leg	muscle
3	chr12:64943600-64946000	Enhancers	Adipose Nuclei	Adipose
4	chr12:64943800-64945800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr12:64944000-64946000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr12:64944200-64945800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:64944400-64945000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:64944400-64945400	Enhancers	Fetal Muscle Trunk	muscle
9	chr12:64944600-64945000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:64944600-64946000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:64944800-64945000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr12:64944800-64945000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:64944800-64945000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr12:64944800-64945000	Enhancers	NHLF	lung
15	chr12:64944800-64945000	Bivalent Enhancer	Osteobl	bone
16	chr12:64944800-64945600	Enhancers	Fetal Kidney	kidney
17	chr12:64944800-64954000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links