Variant report

Variant	rs35731857
Chromosome Location	chr12:64943518-64943519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64943209..64943998-chr12:65194921..65195926,3	MCF-7	breast:
2	chr12:64920914..64922948-chr12:64942008..64944080,2	MCF-7	breast:
3	chr12:64943080..64943968-chr12:65112525..65113209,2	K562	blood:
4	chr12:64943074..64944009-chr12:65001950..65002480,2	MCF-7	breast:
5	chr12:64943500..64944012-chr4:168685873..168686392,2	MCF-7	breast:
6	chr12:64943389..64944029-chr12:65091585..65092723,4	MCF-7	breast:
7	chr12:64943240..64943741-chr12:65089972..65090633,2	MCF-7	breast:
8	chr12:64943084..64944042-chr12:65071790..65072438,4	MCF-7	breast:
9	chr12:64943100..64943984-chr12:65089619..65090816,10	MCF-7	breast:
10	chr12:64941391..64946313-chr12:65088501..65093456,7	MCF-7	breast:
11	chr12:64943084..64943792-chr12:65002036..65002675,2	MCF-7	breast:
12	chr12:64943164..64944020-chr12:65001607..65002572,3	K562	blood:
13	chr12:64942992..64944148-chr12:65089834..65092133,12	K562	blood:
14	chr12:64942909..64943588-chr12:65088552..65089201,2	MCF-7	breast:
15	chr12:64941758..64945041-chr12:65003195..65005244,3	MCF-7	breast:
16	chr12:64943285..64945893-chr12:65089552..65091064,2	K562	blood:
17	chr12:64943293..64944014-chr12:65088905..65089680,2	MCF-7	breast:
18	chr12:64943121..64943994-chr12:65091524..65092506,7	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10459260	0.88[ASN][1000 genomes]
rs10506538	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175429	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12315614	0.91[EUR][1000 genomes]
rs12317855	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12809605	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34027433	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112648	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6581575	0.82[ASN][1000 genomes]
rs66814497	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73124191	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7969932	0.88[ASN][1000 genomes]
rs7973646	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64931400-64944800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:64939000-64943600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:64939000-64943600	Weak transcription	Brain Substantia Nigra	brain
4	chr12:64939200-64944800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr12:64943000-64946000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:64943200-64943800	Enhancers	Dnd41	blood
7	chr12:64943200-64944000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr12:64943200-64944000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr12:64943400-64943600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:64943400-64944000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr12:64943400-64944000	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr12:64943400-64944000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:64943400-64944000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr12:64943400-64944000	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr12:64943400-64944000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr12:64943400-64944200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr12:64943400-64946400	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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