Variant report

Variant	rs11175429
Chromosome Location	chr12:64923437-64923438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10459260	0.94[ASN][1000 genomes]
rs10506538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12315614	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs12317855	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809605	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34027433	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35112648	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35731857	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6581575	0.88[ASN][1000 genomes]
rs66814497	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73124191	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7969932	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7973646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832443	chr12:64878856-65057265	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64912400-64927600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:64916600-64925400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr12:64916800-64925400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:64916800-64925400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:64916800-64925600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:64917000-64925600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr12:64919800-64926600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:64921800-64923600	Enhancers	Dnd41	blood
9	chr12:64922600-64925800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr12:64922800-64925400	Weak transcription	Psoas Muscle	Psoas
11	chr12:64922800-64926800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:64923400-64925400	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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